| Date | Topic | Presenter | Papers |
| Jan 21 | Probe Level Analysis of Affymetrix Chips | Mark Reimers |
Irizarry, et al. (2002) Exploration, Normalization, and Summaries of High Density Oligonucleotide Array Probe Level Data. Bolstad, B.M.,et al (2002), A Comparison of Normalization Methods for High Density Oligonucleotide Array Data Based on Bias and Variance Get Papers |
| Jan 30 (Thurs) | Statistical issues in Probe Analysis of Affy Chips | Mark Reimers | Seminar |
| Feb 4 | No Seminar | ||
| Feb 12 (Wed, at Novum) | A new method for Probe Analysis of Affy Chips | Mark Reimers | Seminar (similar to Jan 30 |
| Feb 18 | Overview of cDNA arrays | ||
| Feb 25 | Seminar | ||
| March 4 | significance levels and multiple comparisons | Arief Gusnanto |
Suggested Topics
| Multiple Comparisons and Permutation Tests | |
| Spatial variation on a chip | |
| Intensity dependent normalization | |
| design of two-color experiments and analysis of variance and dye-gene interactions | |
| image analysis and quality control | |
| time series analysis | |
| classification and discriminant analysis | |
| survival analysis |