| Date | Topic | Presenter | Papers |
| Jan 22 | Experimental Determination of Yeast Networks | Rickard Sandberg |
Lee, et al. Transcriptional Regulatory Networks in Saccharomyces cerevisiae, Science 2002 October 25; 298: 799-804 Ren et al. Genome-Wide Location and Function of DNA Binding Proteins, Science 2000 December 22; 290: 2306-2310 |
| Jan 29 | Network Analysis in E coli | Wynand Alkema | Shen-Orr et al "Network Motifs in the transcriptional network of E coli" , Nature Genetics May 2002 "Milo et al, "Network Motifs: simple building blocks of complex networks", Science, 25 Octorber 2002" |
| Feb 12 | Network Analysis in Yeast | Pär Engstrom | Ihmels et al "Revealing modular organization in the yeast transcriptional network", Nature Genetics August 2002 |
| Feb 26 | Developmental Circuits in Drosophila - I | Mark Reimers | Eldar et al "Robustness of BMP gradient in Drosophila embryonic patterning" Nature 29 Sept 2002 |
| March 12 | CANCELLED | ||
| March 26 | CANCELLED | ||
| April 9 | Developmental Circuits in Drosophila - II | Mark Reimers | Von Dassow et al "The Segment Polarity Network is a Robust Module", Nature 406 (2000), pp. 188?192 Frietson Galis et al. "Conservation of the segmented germband stage: robustness or pleiotropy", Trends in Genetics, 18(10) Background Information: Fly Development |
| April 16 | Regulatory Motifs | Gary Stormo, "Specifity of Protein-DNA interactions", in Collado-Vides & Hofstadt, eds, Gene Regulation and Metabolism, MIT Press, 2000 | |
| April 23 | E Coli regulation | "Genomics of regulation: the view from E coli", in Collado-Vides & Hofstadt, eds, Gene Regulation and Metabolism, MIT Press, 2000 | |
| April 30 | Regulatory Motifs | McGuire & Church,"Discovering DNA regulatory motifs", in Collado-Vides & Hofstadt, eds, Gene Regulation and Metabolism, MIT Press, 2000 | |
| May 7 | Stochastic Simulation | Mark Reimers | Firth & Bray, "Stochastic Simulation of Cell Signaling Networks", in Bower & Bolouri, ed. Computational Modeling of Genetic and Biochemical Networks, MIT Press, 2001 |
| May 14 | Stochastic Simulation | Mark Reimers | Gibson and Bruck, "A probabilistic model of a prokaryotic gene and regulation", in Bower & Bolouri, ed. Computational Modeling of Genetic and Biochemical Networks, MIT Press, 2001 |
| May 21 | Network Inference | ALEXEYENKO, Andrey | Somogyi et al, "Genetic Network Inference", in Bower & Bolouri, ed. Computational Modeling of Genetic and Biochemical Networks, MIT Press, 2001 |
Please suggest further papers